DBNascent | Samples

SRR8478993 Sample ID 216

**Data sources**
Paper identifier	Beckedorff2020human
SRP accession	SRP181677
GEO accession	GSE125535
Samples	SRR8478993

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	280 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype	dox-inducible shRNA Ints11 endogenous (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	35
Read depth after trimming	76,619,560
Duplication proportion	0.34915
Proportion reads mapped	0.8932
Exon/intron ratio	2.98372
Unique read proportion	0.81279

**Bidirectionals**
Total # Tfit bidirectionals	49880
# Promoter Tfit bidirectionals	19942
# Intronic Tfit bidirectionals	16425
# Intergenic Tfit bidirectionals	13707
Total # dREG bidirectionals	38617
# Promoter dREG bidirectionals	8195
# Intronic dREG bidirectionals	16905
# Intergenic dREG bidirectionals	11847
Part of Tfit master merge?	True
Part of dREG master merge?	True