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SRR8478998 Sample ID 221
| Paper identifier | Beckedorff2020human |
| SRP accession | SRP181677 |
| GEO accession | GSE125535 |
| Samples | SRR8478998 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | dox-inducible shRNA control (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -3 day | 0 day | 3 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 133,314,870 |
| Duplication proportion | 0.49862 |
| Proportion reads mapped | 0.8862 |
| Exon/intron ratio | 3.09514 |
| Unique read proportion | 0.76776 |
| Total # Tfit bidirectionals | 61410 |
| # Promoter Tfit bidirectionals | 20095 |
| # Intronic Tfit bidirectionals | 21198 |
| # Intergenic Tfit bidirectionals | 20417 |
| Total # dREG bidirectionals | 59139 |
| # Promoter dREG bidirectionals | 8560 |
| # Intronic dREG bidirectionals | 27385 |
| # Intergenic dREG bidirectionals | 21002 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |