Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR8482948 Sample ID 214
| Paper identifier | Barucci2020small |
| SRP accession | SRP181890 |
| GEO accession | GSE125597 |
| Samples | SRR8482948 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 41 Mb |
| Organism | C. elegans |
| Sample type | organism |
| Cell type | whole worm |
| Clone/Individual | stage adult |
| Strain | N2 |
| Genotype | prg-1 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | This method used Biotin-UTP though they claim to be using GRO-seq |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 24,618,802 |
| Duplication proportion | 0.71771 |
| Proportion reads mapped | 0.8367 |
| Exon/intron ratio | 3.25829 |
| Unique read proportion | 0.35514 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |