DBNascent | Samples

SRR8483109 Sample ID 2886

**Data sources**
Paper identifier	Zhu2019non
SRP accession	SRP181911
GEO accession	GSE125607
Samples	SRR8483109

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	124 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	752 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype	shRNA Yap1 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	54
Read depth after trimming	38,170,975
Duplication proportion	0.47476
Proportion reads mapped	0.8899
Exon/intron ratio	3.87225
Unique read proportion	0.69979

**Bidirectionals**
Total # Tfit bidirectionals	29003
# Promoter Tfit bidirectionals	10827
# Intronic Tfit bidirectionals	13273
# Intergenic Tfit bidirectionals	3567
Total # dREG bidirectionals	17262
# Promoter dREG bidirectionals	6887
# Intronic dREG bidirectionals	6644
# Intergenic dREG bidirectionals	2935
Part of Tfit master merge?	True
Part of dREG master merge?	True