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SRR8544024 Sample ID 2470
| Paper identifier | Thomas2019interaction |
| SRP accession | SRP184472 |
| GEO accession | GSE126207 |
| Samples | SRR8544024 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | Ramos |
| Clone/Individual | |
| Strain | |
| Genotype | Myc-HA fl/fl; tamoxifen-inducible Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hydroxytamoxifen (20 nM) | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 75 |
| Read depth after trimming | 116,990,287 |
| Duplication proportion | 0.56984 |
| Proportion reads mapped | 0.8876 |
| Exon/intron ratio | 2.83043 |
| Unique read proportion | 0.73446 |
| Total # Tfit bidirectionals | 30575 |
| # Promoter Tfit bidirectionals | 13475 |
| # Intronic Tfit bidirectionals | 12121 |
| # Intergenic Tfit bidirectionals | 5454 |
| Total # dREG bidirectionals | 33397 |
| # Promoter dREG bidirectionals | 7337 |
| # Intronic dREG bidirectionals | 16738 |
| # Intergenic dREG bidirectionals | 8087 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |