DBNascent | Samples

SRR8544028 Sample ID 2474

**Data sources**
Paper identifier	Thomas2019interaction
SRP accession	SRP184472
GEO accession	GSE126207
Samples	SRR8544028

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	198 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Ramos
Clone/Individual
Strain
Genotype	Myc truncation fl/fl; tamoxifen-inducible Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hydroxytamoxifen (20 nM)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	75
Read depth after trimming	113,790,148
Duplication proportion	0.71111
Proportion reads mapped	0.8665
Exon/intron ratio	2.92396
Unique read proportion	0.66443

**Bidirectionals**
Total # Tfit bidirectionals	27604
# Promoter Tfit bidirectionals	11466
# Intronic Tfit bidirectionals	11694
# Intergenic Tfit bidirectionals	4687
Total # dREG bidirectionals	28770
# Promoter dREG bidirectionals	7652
# Intronic dREG bidirectionals	13992
# Intergenic dREG bidirectionals	6292
Part of Tfit master merge?	True
Part of dREG master merge?	True