Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR8544029 Sample ID 2475
| Paper identifier | Thomas2019interaction |
| SRP accession | SRP184472 |
| GEO accession | GSE126207 |
| Samples | SRR8544029 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | Ramos |
| Clone/Individual | |
| Strain | |
| Genotype | Myc truncation fl/fl; tamoxifen-inducible Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hydroxytamoxifen (20 nM) | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 75 |
| Read depth after trimming | 199,714,614 |
| Duplication proportion | 0.61679 |
| Proportion reads mapped | 0.871 |
| Exon/intron ratio | 2.7426 |
| Unique read proportion | 0.74425 |
| Total # Tfit bidirectionals | 29842 |
| # Promoter Tfit bidirectionals | 13055 |
| # Intronic Tfit bidirectionals | 11924 |
| # Intergenic Tfit bidirectionals | 5350 |
| Total # dREG bidirectionals | 43713 |
| # Promoter dREG bidirectionals | 7197 |
| # Intronic dREG bidirectionals | 22503 |
| # Intergenic dREG bidirectionals | 12516 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |