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SRR8608051 Sample ID 2180
Paper identifier | Sathyan2019improved |
SRP accession | SRP186571 |
GEO accession | GSE126919 |
Samples | SRR8608051 |
QC score | 3 |
Replicate | 1 |
Protocol | PRO-seq |
Library prep | ligation |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | reverse |
Reverse complemented? | True |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 55 Mb |
Stranded gene read counts | TXT file | 1 Mb |
Unstranded bidirectional read counts | TXT file | 21 Mb |
Tfit bidirectional regions | BED file | 2 Mb |
dREG bidirectional regions | BED file | 530 Kb |
All data files | ZIP archive |
Organism | H. sapiens |
Sample type | cell line |
Cell type | HEK293T |
Clone/Individual | |
Strain | |
Genotype | Znf143 auxin-inducible degron; Tir1 knock-in |
Construct |
Condition type | Treatment | Start time | End time | Duration |
vehicle | DMSO | -3 hr | 0 hr | 3 hr |
Pipeline info and software versions | |
Sample notes | Tir1 insertion into Aavs1 locus |
Analysis notes | Ran qc redo nextflow |
Sample QC score | 3 |
Sample NRO score | 2 |
Raw read length | 75 |
Read depth after trimming | 16,722,870 |
Duplication proportion | 0.21872 |
Proportion reads mapped | 0.5471 |
Exon/intron ratio | 3.73832 |
Unique read proportion | 0.77731 |
Total # Tfit bidirectionals | 19521 |
# Promoter Tfit bidirectionals | 10149 |
# Intronic Tfit bidirectionals | 7487 |
# Intergenic Tfit bidirectionals | 2003 |
Total # dREG bidirectionals | 12271 |
# Promoter dREG bidirectionals | 8161 |
# Intronic dREG bidirectionals | 3868 |
# Intergenic dREG bidirectionals | 797 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |