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SRR8608052 Sample ID 2181
| Paper identifier | Sathyan2019improved |
| SRP accession | SRP186571 |
| GEO accession | GSE126919 |
| Samples | SRR8608052 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T |
| Clone/Individual | |
| Strain | |
| Genotype | Znf143 auxin-inducible degron; Tir1 knock-in |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| Pipeline info and software versions | |
| Sample notes | Tir1 insertion into Aavs1 locus |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 19,695,769 |
| Duplication proportion | 0.22244 |
| Proportion reads mapped | 0.458 |
| Exon/intron ratio | 3.13231 |
| Unique read proportion | 0.77285 |
| Total # Tfit bidirectionals | 15843 |
| # Promoter Tfit bidirectionals | 8028 |
| # Intronic Tfit bidirectionals | 6030 |
| # Intergenic Tfit bidirectionals | 1713 |
| Total # dREG bidirectionals | 9637 |
| # Promoter dREG bidirectionals | 6855 |
| # Intronic dREG bidirectionals | 2721 |
| # Intergenic dREG bidirectionals | 556 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |