DBNascent | Samples

SRR8608065 Sample ID 2194

**Data sources**
Paper identifier	Sathyan2019improved
SRP accession	SRP186571
GEO accession	GSE126919
Samples	SRR8608065

**Technical details**
QC score	3
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	111 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	593 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype	Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Tir1 insertion into Aavs1 locus, Znf143 tagged C-terminally with AID, PB1 domain of Arf16 expressed and cell sorted
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	35
Read depth after trimming	16,182,168
Duplication proportion	0.08521
Proportion reads mapped	0.6793
Exon/intron ratio	3.06749
Unique read proportion	0.84313

**Bidirectionals**
Total # Tfit bidirectionals	25053
# Promoter Tfit bidirectionals	13173
# Intronic Tfit bidirectionals	9229
# Intergenic Tfit bidirectionals	2909
Total # dREG bidirectionals	13744
# Promoter dREG bidirectionals	8050
# Intronic dREG bidirectionals	4326
# Intergenic dREG bidirectionals	1445
Part of Tfit master merge?	True
Part of dREG master merge?	True