DBNascent | Samples

SRR8706164 Sample ID 2140

**Data sources**
Paper identifier	Santoriello2020rna
SRP accession	SRP188036
GEO accession	GSE128081
Samples	SRR8706164

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	not noted in GEO or publication
Spike-in	D. melanogaster
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	104 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1011 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A375
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	No protocol or library prep details in paper or GEO - poorly written methods
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	42
Read depth after trimming	16,476,297
Duplication proportion	0.18491
Proportion reads mapped	0.743
Exon/intron ratio	5.88586
Unique read proportion	0.72254

**Bidirectionals**
Total # Tfit bidirectionals	33358
# Promoter Tfit bidirectionals	10771
# Intronic Tfit bidirectionals	13752
# Intergenic Tfit bidirectionals	8589
Total # dREG bidirectionals	23385
# Promoter dREG bidirectionals	8900
# Intronic dREG bidirectionals	8648
# Intergenic dREG bidirectionals	5485
Part of Tfit master merge?	True
Part of dREG master merge?	True