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SRR8706164 Sample ID 2140
| Paper identifier | Santoriello2020rna |
| SRP accession | SRP188036 |
| GEO accession | GSE128081 |
| Samples | SRR8706164 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | D. melanogaster |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | A375 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | No protocol or library prep details in paper or GEO - poorly written methods |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 42 |
| Read depth after trimming | 16,476,297 |
| Duplication proportion | 0.18491 |
| Proportion reads mapped | 0.743 |
| Exon/intron ratio | 5.88586 |
| Unique read proportion | 0.72254 |
| Total # Tfit bidirectionals | 33358 |
| # Promoter Tfit bidirectionals | 10771 |
| # Intronic Tfit bidirectionals | 13752 |
| # Intergenic Tfit bidirectionals | 8589 |
| Total # dREG bidirectionals | 23385 |
| # Promoter dREG bidirectionals | 8900 |
| # Intronic dREG bidirectionals | 8648 |
| # Intergenic dREG bidirectionals | 5485 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |