DBNascent | Samples

SRR8714802 Sample ID 363

**Data sources**
Paper identifier	Boxer2020mecp2
SRP accession	SRP188216
GEO accession	GSE128183
Samples	SRR8714802

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	125 Mb
Stranded gene read counts	TXT file	936 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	forebrain
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	These WT mice were male R306C littermates (MECP2 +/Y)
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	3
Raw read length	75
Read depth after trimming	84,593,129
Duplication proportion	0.67924
Proportion reads mapped	0.6499
Exon/intron ratio	5.6933
Unique read proportion	0.55199

**Bidirectionals**
Total # Tfit bidirectionals	47454
# Promoter Tfit bidirectionals	17697
# Intronic Tfit bidirectionals	14730
# Intergenic Tfit bidirectionals	11900
Total # dREG bidirectionals	38223
# Promoter dREG bidirectionals	9818
# Intronic dREG bidirectionals	15244
# Intergenic dREG bidirectionals	9439
Part of Tfit master merge?	True
Part of dREG master merge?	True