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SRR8714806 Sample ID 367
| Paper identifier | Boxer2020mecp2 |
| SRP accession | SRP188216 |
| GEO accession | GSE128183 |
| Samples | SRR8714806 |
| QC score | 3 |
| Replicate | 5 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 160 Mb |
| Stranded gene read counts | TXT file | 940 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 5 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | forebrain |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | These WT mice were male R306C littermates (MECP2 +/Y) |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 3 |
| Raw read length | 75 |
| Read depth after trimming | 107,463,503 |
| Duplication proportion | 0.70416 |
| Proportion reads mapped | 0.7294 |
| Exon/intron ratio | 5.73816 |
| Unique read proportion | 0.55408 |
| Total # Tfit bidirectionals | 58383 |
| # Promoter Tfit bidirectionals | 19853 |
| # Intronic Tfit bidirectionals | 17711 |
| # Intergenic Tfit bidirectionals | 17277 |
| Total # dREG bidirectionals | 50634 |
| # Promoter dREG bidirectionals | 9224 |
| # Intronic dREG bidirectionals | 21987 |
| # Intergenic dREG bidirectionals | 14575 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |