DBNascent | Samples

SRR8714811 Sample ID 372

**Data sources**
Paper identifier	Boxer2020mecp2
SRP accession	SRP188216
GEO accession	GSE128183
Samples	SRR8714811

**Technical details**
QC score	3
Replicate	5
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	218 Mb
Stranded gene read counts	TXT file	943 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	forebrain
Clone/Individual
Strain
Genotype	Mecp2 R306C/Y
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	75
Read depth after trimming	139,893,609
Duplication proportion	0.70057
Proportion reads mapped	0.7587
Exon/intron ratio	4.94421
Unique read proportion	0.61254

**Bidirectionals**
Total # Tfit bidirectionals	58318
# Promoter Tfit bidirectionals	20230
# Intronic Tfit bidirectionals	16748
# Intergenic Tfit bidirectionals	17772
Total # dREG bidirectionals	54916
# Promoter dREG bidirectionals	8861
# Intronic dREG bidirectionals	24631
# Intergenic dREG bidirectionals	16228
Part of Tfit master merge?	True
Part of dREG master merge?	True