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SRR8714813 Sample ID 374
| Paper identifier | Boxer2020mecp2 |
| SRP accession | SRP188216 |
| GEO accession | GSE128183 |
| Samples | SRR8714813 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 94 Mb |
| Stranded gene read counts | TXT file | 939 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | forebrain |
| Clone/Individual | |
| Strain | |
| Genotype | Dmnt3a fl/fl |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 106,082,880 |
| Duplication proportion | 0.83744 |
| Proportion reads mapped | 0.6669 |
| Exon/intron ratio | 4.53057 |
| Unique read proportion | 0.51199 |
| Total # Tfit bidirectionals | 34023 |
| # Promoter Tfit bidirectionals | 14629 |
| # Intronic Tfit bidirectionals | 10445 |
| # Intergenic Tfit bidirectionals | 6110 |
| Total # dREG bidirectionals | 28362 |
| # Promoter dREG bidirectionals | 9441 |
| # Intronic dREG bidirectionals | 10481 |
| # Intergenic dREG bidirectionals | 5261 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |