DBNascent | Samples

SRR8714816 Sample ID 377

**Data sources**
Paper identifier	Boxer2020mecp2
SRP accession	SRP188216
GEO accession	GSE128183
Samples	SRR8714816

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	117 Mb
Stranded gene read counts	TXT file	937 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	forebrain
Clone/Individual
Strain
Genotype	Dmnt3a fl/fl; Nestin-Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	3
Raw read length	75
Read depth after trimming	92,678,345
Duplication proportion	0.75122
Proportion reads mapped	0.6833
Exon/intron ratio	5.77794
Unique read proportion	0.51572

**Bidirectionals**
Total # Tfit bidirectionals	49164
# Promoter Tfit bidirectionals	17810
# Intronic Tfit bidirectionals	15966
# Intergenic Tfit bidirectionals	12269
Total # dREG bidirectionals	39530
# Promoter dREG bidirectionals	9649
# Intronic dREG bidirectionals	16116
# Intergenic dREG bidirectionals	9907
Part of Tfit master merge?	True
Part of dREG master merge?	True