DBNascent | Samples

SRR8714817 Sample ID 378

**Data sources**
Paper identifier	Boxer2020mecp2
SRP accession	SRP188216
GEO accession	GSE128183
Samples	SRR8714817

**Technical details**
QC score	4
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	60 Mb
Stranded gene read counts	TXT file	941 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	forebrain
Clone/Individual
Strain
Genotype	Dmnt3a fl/fl; Nestin-Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	5
Raw read length	75
Read depth after trimming	173,479,213
Duplication proportion	0.94986
Proportion reads mapped	0.6654
Exon/intron ratio	10.9702
Unique read proportion	0.29779

**Bidirectionals**
Total # Tfit bidirectionals	30588
# Promoter Tfit bidirectionals	11604
# Intronic Tfit bidirectionals	10859
# Intergenic Tfit bidirectionals	5390
Total # dREG bidirectionals	27799
# Promoter dREG bidirectionals	10150
# Intronic dREG bidirectionals	10069
# Intergenic dREG bidirectionals	4885
Part of Tfit master merge?	True
Part of dREG master merge?	True