Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR8714819 Sample ID 380
| Paper identifier | Boxer2020mecp2 |
| SRP accession | SRP188217 |
| GEO accession | GSE128184 |
| Samples | SRR8714819 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 116 Mb |
| Stranded gene read counts | TXT file | 928 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | forebrain |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO (10%) | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | Male mice (MECP2 +/Y); vehicle or flavopiridol were injected into mice for the given time before tissue dissection |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 49,083,534 |
| Duplication proportion | 0.41094 |
| Proportion reads mapped | 0.6143 |
| Exon/intron ratio | 4.11455 |
| Unique read proportion | 0.72364 |
| Total # Tfit bidirectionals | 36268 |
| # Promoter Tfit bidirectionals | 15815 |
| # Intronic Tfit bidirectionals | 10898 |
| # Intergenic Tfit bidirectionals | 6866 |
| Total # dREG bidirectionals | 25610 |
| # Promoter dREG bidirectionals | 8642 |
| # Intronic dREG bidirectionals | 9475 |
| # Intergenic dREG bidirectionals | 4388 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |