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SRR8714824 Sample ID 385
| Paper identifier | Boxer2020mecp2 |
| SRP accession | SRP188217 |
| GEO accession | GSE128184 |
| Samples | SRR8714824 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 70 Mb |
| Stranded gene read counts | TXT file | 922 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | forebrain |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (50 mg/kg) | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | Male mice (MECP2 +/Y); vehicle or flavopiridol were injected into mice for the given time before tissue dissection |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 75 |
| Read depth after trimming | 34,035,705 |
| Duplication proportion | 0.57245 |
| Proportion reads mapped | 0.6527 |
| Exon/intron ratio | 5.66106 |
| Unique read proportion | 0.5469 |
| Total # Tfit bidirectionals | 29305 |
| # Promoter Tfit bidirectionals | 11893 |
| # Intronic Tfit bidirectionals | 10691 |
| # Intergenic Tfit bidirectionals | 4185 |
| Total # dREG bidirectionals | 24301 |
| # Promoter dREG bidirectionals | 9109 |
| # Intronic dREG bidirectionals | 9474 |
| # Intergenic dREG bidirectionals | 3084 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |