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SRR8714829 Sample ID 390
| Paper identifier | Boxer2020mecp2 |
| SRP accession | SRP188217 |
| GEO accession | GSE128184 |
| Samples | SRR8714829 |
| QC score | 2 |
| Replicate | 3 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 68 Mb |
| Stranded gene read counts | TXT file | 921 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 952 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | forebrain |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (50 mg/kg) | -60 min | 0 min | 1 hr |
| Pipeline info and software versions | |
| Sample notes | Male mice (MECP2 +/Y); vehicle or flavopiridol were injected into mice for the given time before tissue dissection |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 75 |
| Read depth after trimming | 33,074,438 |
| Duplication proportion | 0.53548 |
| Proportion reads mapped | 0.6114 |
| Exon/intron ratio | 5.37535 |
| Unique read proportion | 0.55698 |
| Total # Tfit bidirectionals | 28066 |
| # Promoter Tfit bidirectionals | 12077 |
| # Intronic Tfit bidirectionals | 9995 |
| # Intergenic Tfit bidirectionals | 3476 |
| Total # dREG bidirectionals | 21801 |
| # Promoter dREG bidirectionals | 8459 |
| # Intronic dREG bidirectionals | 8237 |
| # Intergenic dREG bidirectionals | 2428 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |