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SRR8714835 Sample ID 396
| Paper identifier | Boxer2020mecp2 |
| SRP accession | SRP188217 |
| GEO accession | GSE128184 |
| Samples | SRR8714835 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 154 Mb |
| Stranded gene read counts | TXT file | 931 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | forebrain |
| Clone/Individual | |
| Strain | |
| Genotype | Mecp2 -/Y |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (50 mg/kg) | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | vehicle or flavopiridol were injected into mice for the given time before tissue dissection |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 77,637,182 |
| Duplication proportion | 0.55764 |
| Proportion reads mapped | 0.6801 |
| Exon/intron ratio | 3.79534 |
| Unique read proportion | 0.68151 |
| Total # Tfit bidirectionals | 29545 |
| # Promoter Tfit bidirectionals | 11344 |
| # Intronic Tfit bidirectionals | 10835 |
| # Intergenic Tfit bidirectionals | 4993 |
| Total # dREG bidirectionals | 29643 |
| # Promoter dREG bidirectionals | 8245 |
| # Intronic dREG bidirectionals | 13152 |
| # Intergenic dREG bidirectionals | 4719 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |