DBNascent | Samples

SRR8714839 Sample ID 400

**Data sources**
Paper identifier	Boxer2020mecp2
SRP accession	SRP188217
GEO accession	GSE128184
Samples	SRR8714839

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	111 Mb
Stranded gene read counts	TXT file	930 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	forebrain
Clone/Individual
Strain
Genotype	Mecp2 -/Y
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	flavopiridol (50 mg/kg)	-60 min	0 min	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	vehicle or flavopiridol were injected into mice for the given time before tissue dissection
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	4
Raw read length	75
Read depth after trimming	69,677,065
Duplication proportion	0.66903
Proportion reads mapped	0.6968
Exon/intron ratio	7.03726
Unique read proportion	0.50521

**Bidirectionals**
Total # Tfit bidirectionals	37367
# Promoter Tfit bidirectionals	13790
# Intronic Tfit bidirectionals	14366
# Intergenic Tfit bidirectionals	6645
Total # dREG bidirectionals	32707
# Promoter dREG bidirectionals	8911
# Intronic dREG bidirectionals	14561
# Intergenic dREG bidirectionals	5801
Part of Tfit master merge?	True
Part of dREG master merge?	True