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SRR8714840 Sample ID 401
Paper identifier | Boxer2020mecp2 |
SRP accession | SRP188217 |
GEO accession | GSE128184 |
Samples | SRR8714840 |
QC score | 2 |
Replicate | 3 |
Protocol | PRO-seq |
Library prep | ligation |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | reverse |
Reverse complemented? | True |
Mapped strandedness | forward |
Timecourse | True |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 138 Mb |
Stranded gene read counts | TXT file | 930 Kb |
Unstranded bidirectional read counts | TXT file | 17 Mb |
Tfit bidirectional regions | BED file | 3 Mb |
dREG bidirectional regions | BED file | 1 Mb |
All data files | ZIP archive |
Organism | M. musculus |
Sample type | tissue |
Cell type | forebrain |
Clone/Individual | |
Strain | |
Genotype | Mecp2 -/Y |
Construct |
Condition type | Treatment | Start time | End time | Duration |
treatment | flavopiridol (50 mg/kg) | -60 min | 0 min | 1 hr |
Pipeline info and software versions | |
Sample notes | vehicle or flavopiridol were injected into mice for the given time before tissue dissection |
Analysis notes |
Sample QC score | 2 |
Sample NRO score | 3 |
Raw read length | 75 |
Read depth after trimming | 74,774,756 |
Duplication proportion | 0.59019 |
Proportion reads mapped | 0.6939 |
Exon/intron ratio | 5.29839 |
Unique read proportion | 0.5723 |
Total # Tfit bidirectionals | 36618 |
# Promoter Tfit bidirectionals | 14489 |
# Intronic Tfit bidirectionals | 12931 |
# Intergenic Tfit bidirectionals | 6622 |
Total # dREG bidirectionals | 31429 |
# Promoter dREG bidirectionals | 8426 |
# Intronic dREG bidirectionals | 13926 |
# Intergenic dREG bidirectionals | 5587 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |