SRR8714840 Sample ID 401

Data sources
Paper identifier Boxer2020mecp2
SRP accession SRP188217
GEO accession GSE128184
Samples SRR8714840
Technical details
QC score 2
Replicate 3
Protocol PRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 138 Mb
Stranded gene read counts TXT file 930 Kb
Unstranded bidirectional read counts TXT file 17 Mb
Tfit bidirectional regions BED file 3 Mb
dREG bidirectional regions BED file 1 Mb
All data files ZIP archive
Cellular details
Organism M. musculus
Sample type tissue
Cell type forebrain
Clone/Individual
Strain
Genotype Mecp2 -/Y
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment flavopiridol (50 mg/kg) -60 min 0 min 1 hr
Extended notes
Pipeline info and software versions
Sample notes vehicle or flavopiridol were injected into mice for the given time before tissue dissection
Analysis notes
Sample metrics
Sample QC score 2
Sample NRO score 3
Raw read length 75
Read depth after trimming 74,774,756
Duplication proportion 0.59019
Proportion reads mapped 0.6939
Exon/intron ratio 5.29839
Unique read proportion 0.5723
Bidirectionals
Total # Tfit bidirectionals 36618
# Promoter Tfit bidirectionals 14489
# Intronic Tfit bidirectionals 12931
# Intergenic Tfit bidirectionals 6622
Total # dREG bidirectionals 31429
# Promoter dREG bidirectionals 8426
# Intronic dREG bidirectionals 13926
# Intergenic dREG bidirectionals 5587
Part of Tfit master merge? True
Part of dREG master merge? True