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SRR8743261 Sample ID 240
| Paper identifier | Bi2020enhancer |
| SRP accession | SRP188708 |
| GEO accession | GSE128452 |
| Samples | SRR8743261 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 172 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 925 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | tamoxifen-sensitive |
| Strain | |
| Genotype | dox-inducible Jun (stable); shRNA control (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 53,583,405 |
| Duplication proportion | 0.4726 |
| Proportion reads mapped | 0.9135 |
| Exon/intron ratio | 3.08582 |
| Unique read proportion | 0.72264 |
| Total # Tfit bidirectionals | 27438 |
| # Promoter Tfit bidirectionals | 9572 |
| # Intronic Tfit bidirectionals | 12006 |
| # Intergenic Tfit bidirectionals | 5022 |
| Total # dREG bidirectionals | 21338 |
| # Promoter dREG bidirectionals | 7721 |
| # Intronic dREG bidirectionals | 8566 |
| # Intergenic dREG bidirectionals | 4662 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |