DBNascent | Samples

SRR8743266 Sample ID 245

**Data sources**
Paper identifier	Bi2020enhancer
SRP accession	SRP188708
GEO accession	GSE128452
Samples	SRR8743266

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	135 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	811 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual	tamoxifen-sensitive
Strain
Genotype	shRNA Gata3 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	45,667,970
Duplication proportion	0.54732
Proportion reads mapped	0.9227
Exon/intron ratio	3.16965
Unique read proportion	0.68545

**Bidirectionals**
Total # Tfit bidirectionals	26850
# Promoter Tfit bidirectionals	9311
# Intronic Tfit bidirectionals	12214
# Intergenic Tfit bidirectionals	4083
Total # dREG bidirectionals	18725
# Promoter dREG bidirectionals	7504
# Intronic dREG bidirectionals	7218
# Intergenic dREG bidirectionals	3590
Part of Tfit master merge?	True
Part of dREG master merge?	True