DBNascent | Samples

SRR8743267 Sample ID 246

**Data sources**
Paper identifier	Bi2020enhancer
SRP accession	SRP188708
GEO accession	GSE128452
Samples	SRR8743267

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	123 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	699 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual	tamoxifen-resistant
Strain
Genotype	shRNA control (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hydroxytamoxifen (100 nM)	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	36,034,421
Duplication proportion	0.42627
Proportion reads mapped	0.9177
Exon/intron ratio	3.09188
Unique read proportion	0.70993

**Bidirectionals**
Total # Tfit bidirectionals	23167
# Promoter Tfit bidirectionals	8545
# Intronic Tfit bidirectionals	10063
# Intergenic Tfit bidirectionals	3762
Total # dREG bidirectionals	16137
# Promoter dREG bidirectionals	6683
# Intronic dREG bidirectionals	6281
# Intergenic dREG bidirectionals	2844
Part of Tfit master merge?	True
Part of dREG master merge?	True