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SRR8767375 Sample ID 1707
| Paper identifier | Liu2020immediate |
| SRP accession | SRP189113 |
| GEO accession | GSE128698 |
| Samples | SRR8767375 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 13 Mb |
| Organism | A. thaliana |
| Sample type | tissue |
| Cell type | leaf |
| Clone/Individual | |
| Strain | Col-0 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | heat pretreatment (37 Celsius) | -10080 min | -9990 min | 90 min |
| treatment | heat pretreatment (37 Celsius) | -1440 min | -1350 min | 90 min |
| treatment | heat pretreatment (37 Celsius) | -2880 min | -2790 min | 90 min |
| treatment | heat pretreatment (37 Celsius) | -4320 min | -4230 min | 90 min |
| treatment | heat pretreatment (37 Celsius) | -5760 min | -5670 min | 90 min |
| treatment | heat pretreatment (37 Celsius) | -7200 min | -7110 min | 90 min |
| treatment | heat pretreatment (37 Celsius) | -8640 min | -8550 min | 90 min |
| treatment | heat shock (45 Celsius) | -5 min | 0 min | 5 min |
| Pipeline info and software versions | |
| Sample notes | 1.5 hr heat priming treatment for a week |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 30 |
| Read depth after trimming | 36,261,507 |
| Duplication proportion | 0.90234 |
| Proportion reads mapped | 0.4812 |
| Exon/intron ratio | 1.39913 |
| Unique read proportion | 0.14865 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |