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SRR8812165 Sample ID 607
| Paper identifier | Douillet2020uncoupling |
| SRP accession | SRP189864 |
| GEO accession | GSE129037 |
| Samples | SRR8812165 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 354 Mb |
| Stranded gene read counts | TXT file | 939 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 7 Mb |
| dREG bidirectional regions | BED file | 4 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | Mll2 -/-; shRNA Cxxc1 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 16 |
| Read depth after trimming | 118,909,285 |
| Duplication proportion | 0.44879 |
| Proportion reads mapped | 0.8306 |
| Exon/intron ratio | 3.05842 |
| Unique read proportion | 0.7399 |
| Total # Tfit bidirectionals | 86288 |
| # Promoter Tfit bidirectionals | 16920 |
| # Intronic Tfit bidirectionals | 25913 |
| # Intergenic Tfit bidirectionals | 38115 |
| Total # dREG bidirectionals | 90600 |
| # Promoter dREG bidirectionals | 9657 |
| # Intronic dREG bidirectionals | 33731 |
| # Intergenic dREG bidirectionals | 41963 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |