DBNascent | Samples

SRR8812167 Sample ID 609

**Data sources**
Paper identifier	Douillet2020uncoupling
SRP accession	SRP189864
GEO accession	GSE129037
Samples	SRR8812167

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	160 Mb
Stranded gene read counts	TXT file	926 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype	Mll2 -/-; shRNA control (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	16
Read depth after trimming	54,533,289
Duplication proportion	0.4406
Proportion reads mapped	0.8534
Exon/intron ratio	3.04724
Unique read proportion	0.67289

**Bidirectionals**
Total # Tfit bidirectionals	39832
# Promoter Tfit bidirectionals	10887
# Intronic Tfit bidirectionals	11898
# Intergenic Tfit bidirectionals	12862
Total # dREG bidirectionals	30344
# Promoter dREG bidirectionals	6644
# Intronic dREG bidirectionals	9898
# Intergenic dREG bidirectionals	11569
Part of Tfit master merge?	True
Part of dREG master merge?	True