DBNascent | Samples

SRR8812168 Sample ID 610

**Data sources**
Paper identifier	Douillet2020uncoupling
SRP accession	SRP189864
GEO accession	GSE129037
Samples	SRR8812168

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	186 Mb
Stranded gene read counts	TXT file	930 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype	Mll2 -/-; shRNA Cxxc1 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	16
Read depth after trimming	61,537,528
Duplication proportion	0.42484
Proportion reads mapped	0.8421
Exon/intron ratio	2.94206
Unique read proportion	0.69175

**Bidirectionals**
Total # Tfit bidirectionals	50198
# Promoter Tfit bidirectionals	11226
# Intronic Tfit bidirectionals	14829
# Intergenic Tfit bidirectionals	19289
Total # dREG bidirectionals	37915
# Promoter dREG bidirectionals	7022
# Intronic dREG bidirectionals	12610
# Intergenic dREG bidirectionals	15822
Part of Tfit master merge?	True
Part of dREG master merge?	True