DBNascent | Samples

SRR8867635 Sample ID 2328

**Data sources**
Paper identifier	Steinparzer2019transcriptional
SRP accession	SRP191474
GEO accession	GSE129501
Samples	SRR8867635

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	213 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	3MB-PP1 (10 microM)	-45 min	0 min	45 min
treatment	IFN-gamma (10 ng/mL)	-45 min	0 min	45 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	76
Read depth after trimming	110,768,801
Duplication proportion	0.69094
Proportion reads mapped	0.9311
Exon/intron ratio	4.05164
Unique read proportion	0.52241

**Bidirectionals**
Total # Tfit bidirectionals	48045
# Promoter Tfit bidirectionals	20513
# Intronic Tfit bidirectionals	15650
# Intergenic Tfit bidirectionals	12124
Total # dREG bidirectionals	38557
# Promoter dREG bidirectionals	9581
# Intronic dREG bidirectionals	15072
# Intergenic dREG bidirectionals	12509
Part of Tfit master merge?	True
Part of dREG master merge?	True