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SRR8867636 Sample ID 2329
| Paper identifier | Steinparzer2019transcriptional |
| SRP accession | SRP191474 |
| GEO accession | GSE129501 |
| Samples | SRR8867636 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 209 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HCT116 |
| Clone/Individual | |
| Strain | |
| Genotype | Cdk8 F97G |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -45 min | 0 min | 45 min |
| vehicle | PBS | -45 min | 0 min | 45 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 105,928,927 |
| Duplication proportion | 0.66736 |
| Proportion reads mapped | 0.9179 |
| Exon/intron ratio | 3.69878 |
| Unique read proportion | 0.49573 |
| Total # Tfit bidirectionals | 44031 |
| # Promoter Tfit bidirectionals | 19625 |
| # Intronic Tfit bidirectionals | 14218 |
| # Intergenic Tfit bidirectionals | 10215 |
| Total # dREG bidirectionals | 32958 |
| # Promoter dREG bidirectionals | 8690 |
| # Intronic dREG bidirectionals | 12770 |
| # Intergenic dREG bidirectionals | 10029 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |