DBNascent | Samples

SRR8867637 Sample ID 2330

**Data sources**
Paper identifier	Steinparzer2019transcriptional
SRP accession	SRP191474
GEO accession	GSE129501
Samples	SRR8867637

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	190 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype	Cdk8 F97G
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-45 min	0 min	45 min
vehicle	PBS	-45 min	0 min	45 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	76
Read depth after trimming	98,568,836
Duplication proportion	0.67505
Proportion reads mapped	0.9148
Exon/intron ratio	3.7464
Unique read proportion	0.48535

**Bidirectionals**
Total # Tfit bidirectionals	43294
# Promoter Tfit bidirectionals	19846
# Intronic Tfit bidirectionals	13713
# Intergenic Tfit bidirectionals	10047
Total # dREG bidirectionals	32779
# Promoter dREG bidirectionals	9148
# Intronic dREG bidirectionals	12413
# Intergenic dREG bidirectionals	9935
Part of Tfit master merge?	True
Part of dREG master merge?	True