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SRR8887163 Sample ID 1763
| Paper identifier | Ma2020super |
| SRP accession | SRP192310 |
| GEO accession | GSE129701 |
| Samples | SRR8887163 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | A2780 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | cisplatin (2 microM) | -1 day | 0 day | 1 day |
| treatment | cisplatin (2 microM) | -3 day | -1 day | 2 day |
| Pipeline info and software versions | |
| Sample notes | Vehicle not specified, but often PBS for cisplatin |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 41,126,189 |
| Duplication proportion | 0.583 |
| Proportion reads mapped | 0.8691 |
| Exon/intron ratio | 2.93931 |
| Unique read proportion | 0.55524 |
| Total # Tfit bidirectionals | 29383 |
| # Promoter Tfit bidirectionals | 14644 |
| # Intronic Tfit bidirectionals | 10131 |
| # Intergenic Tfit bidirectionals | 4526 |
| Total # dREG bidirectionals | 18064 |
| # Promoter dREG bidirectionals | 8419 |
| # Intronic dREG bidirectionals | 5927 |
| # Intergenic dREG bidirectionals | 3393 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |