DBNascent | Samples

SRR8887165 Sample ID 1765

**Data sources**
Paper identifier	Ma2020super
SRP accession	SRP192310
GEO accession	GSE129701
Samples	SRR8887165

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	93 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	738 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A2780
Clone/Individual	cisplatin resistant
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	cisplatin (6 microM)	-1 day	0 day	1 day
treatment	cisplatin (6 microM)	-3 day	-1 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes	Vehicle not specified, but often PBS for cisplatin
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	45,546,693
Duplication proportion	0.68696
Proportion reads mapped	0.864
Exon/intron ratio	2.60873
Unique read proportion	0.48096

**Bidirectionals**
Total # Tfit bidirectionals	26822
# Promoter Tfit bidirectionals	13910
# Intronic Tfit bidirectionals	8796
# Intergenic Tfit bidirectionals	4165
Total # dREG bidirectionals	16998
# Promoter dREG bidirectionals	8676
# Intronic dREG bidirectionals	5159
# Intergenic dREG bidirectionals	3139
Part of Tfit master merge?	True
Part of dREG master merge?	True