DBNascent | Samples

SRR8887174 Sample ID 1766

**Data sources**
Paper identifier	Ma2020super
SRP accession	SRP192310
GEO accession	GSE129701
Samples	SRR8887174

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	34 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	965 Kb
dREG bidirectional regions	BED file	438 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A2780
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	PBS	-1 day	0 day	1 day
vehicle	PBS	-3 day	-1 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes	Vehicle not specified, but often PBS for cisplatin
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	7,443,262
Duplication proportion	0.43148
Proportion reads mapped	0.8166
Exon/intron ratio	3.56571
Unique read proportion	0.53699

**Bidirectionals**
Total # Tfit bidirectionals	11117
# Promoter Tfit bidirectionals	6236
# Intronic Tfit bidirectionals	3872
# Intergenic Tfit bidirectionals	1312
Total # dREG bidirectionals	10216
# Promoter dREG bidirectionals	7213
# Intronic dREG bidirectionals	2524
# Intergenic dREG bidirectionals	1058
Part of Tfit master merge?	True
Part of dREG master merge?	True