DBNascent | Samples

SRR8887175 Sample ID 1767

**Data sources**
Paper identifier	Ma2020super
SRP accession	SRP192310
GEO accession	GSE129701
Samples	SRR8887175

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	528 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A2780
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	cisplatin (2 microM)	-1 day	0 day	1 day
treatment	cisplatin (2 microM)	-3 day	-1 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes	Vehicle not specified, but often PBS for cisplatin
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	10,943,344
Duplication proportion	0.48981
Proportion reads mapped	0.8202
Exon/intron ratio	3.60816
Unique read proportion	0.50501

**Bidirectionals**
Total # Tfit bidirectionals	15554
# Promoter Tfit bidirectionals	8306
# Intronic Tfit bidirectionals	5592
# Intergenic Tfit bidirectionals	2031
Total # dREG bidirectionals	12304
# Promoter dREG bidirectionals	7953
# Intronic dREG bidirectionals	3332
# Intergenic dREG bidirectionals	1392
Part of Tfit master merge?	True
Part of dREG master merge?	True