DBNascent | Samples

SRR892016 Sample ID 2723

**Data sources**
Paper identifier	Yang2013lncrna
SRP	SRP024669
Samples	SRR892016

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	64 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	348 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	44
Read depth after trimming	21,343,085
Duplication proportion	0.56289
Proportion reads mapped	0.8408
Exon/intron ratio	2.23625
Unique read proportion	0.45678

**Bidirectionals**
Total # Tfit bidirectionals	12306
# Promoter Tfit bidirectionals	5583
# Intronic Tfit bidirectionals	5062
# Intergenic Tfit bidirectionals	1526
Total # dREG bidirectionals	8082
# Promoter dREG bidirectionals	4512
# Intronic dREG bidirectionals	2526
# Intergenic dREG bidirectionals	1248
Part of Tfit master merge?	True
Part of dREG master merge?	True