DBNascent | Samples

SRR892017 Sample ID 2725

**Data sources**
Paper identifier	Yang2013lncrna
SRP accession	SRP024669
GEO accession	GSE47805
Samples	SRR892017

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	74 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	448 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	44
Read depth after trimming	25,904,577
Duplication proportion	0.56683
Proportion reads mapped	0.8565
Exon/intron ratio	2.31386
Unique read proportion	0.45731

**Bidirectionals**
Total # Tfit bidirectionals	15057
# Promoter Tfit bidirectionals	7072
# Intronic Tfit bidirectionals	5927
# Intergenic Tfit bidirectionals	1889
Total # dREG bidirectionals	10399
# Promoter dREG bidirectionals	5628
# Intronic dREG bidirectionals	3330
# Intergenic dREG bidirectionals	1549
Part of Tfit master merge?	True
Part of dREG master merge?	True