DBNascent | Samples

SRR892018 Sample ID 2725

**Data sources**
Paper identifier	Yang2013lncrna
SRP	SRP024669
Samples	SRR892018

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	84 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	604 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Pygo2

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	44
Read depth after trimming	27,526,408
Duplication proportion	0.52458
Proportion reads mapped	0.8634
Exon/intron ratio	2.24526
Unique read proportion	0.50866

**Bidirectionals**
Total # Tfit bidirectionals	18988
# Promoter Tfit bidirectionals	8755
# Intronic Tfit bidirectionals	7701
# Intergenic Tfit bidirectionals	2637
Total # dREG bidirectionals	14002
# Promoter dREG bidirectionals	7184
# Intronic dREG bidirectionals	4936
# Intergenic dREG bidirectionals	2103
Part of Tfit master merge?	True
Part of dREG master merge?	True