DBNascent | Samples

SRR892019 Sample ID 2727

**Data sources**
Paper identifier	Yang2013lncrna
SRP accession	SRP024669
GEO accession	GSE47805
Samples	SRR892019

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	60 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	400 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Pygo2

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	44
Read depth after trimming	19,537,529
Duplication proportion	0.5657
Proportion reads mapped	0.8588
Exon/intron ratio	2.46925
Unique read proportion	0.45153

**Bidirectionals**
Total # Tfit bidirectionals	13995
# Promoter Tfit bidirectionals	6829
# Intronic Tfit bidirectionals	5419
# Intergenic Tfit bidirectionals	1616
Total # dREG bidirectionals	9291
# Promoter dREG bidirectionals	5473
# Intronic dREG bidirectionals	2774
# Intergenic dREG bidirectionals	1178
Part of Tfit master merge?	True
Part of dREG master merge?	True