DBNascent | Samples

SRR892025 Sample ID 2727

**Data sources**
Paper identifier	Yang2013lncrna
SRP	SRP024674
Samples	SRR892025

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	75 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	704 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	42
Read depth after trimming	21,384,449
Duplication proportion	0.49128
Proportion reads mapped	0.8718
Exon/intron ratio	2.6367
Unique read proportion	0.54389

**Bidirectionals**
Total # Tfit bidirectionals	24499
# Promoter Tfit bidirectionals	9439
# Intronic Tfit bidirectionals	10786
# Intergenic Tfit bidirectionals	4045
Total # dREG bidirectionals	16315
# Promoter dREG bidirectionals	7532
# Intronic dREG bidirectionals	6175
# Intergenic dREG bidirectionals	2820
Part of Tfit master merge?	True
Part of dREG master merge?	True