DBNascent | Samples

SRR892027 Sample ID 2730

**Data sources**
Paper identifier	Yang2013lncrna
SRP accession	SRP024674
GEO accession	GSE47806
Samples	SRR892027

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	138 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	918 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Prncr1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	42
Read depth after trimming	38,021,719
Duplication proportion	0.39595
Proportion reads mapped	0.8821
Exon/intron ratio	1.85338
Unique read proportion	0.67007

**Bidirectionals**
Total # Tfit bidirectionals	26745
# Promoter Tfit bidirectionals	9467
# Intronic Tfit bidirectionals	11349
# Intergenic Tfit bidirectionals	5517
Total # dREG bidirectionals	21204
# Promoter dREG bidirectionals	7392
# Intronic dREG bidirectionals	9135
# Intergenic dREG bidirectionals	4634
Part of Tfit master merge?	True
Part of dREG master merge?	True