DBNascent | Samples

SRR892028 Sample ID 2731

**Data sources**
Paper identifier	Yang2013lncrna
SRP accession	SRP024674
GEO accession	GSE47806
Samples	SRR892028

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	34 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	794 Kb
dREG bidirectional regions	BED file	298 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	42
Read depth after trimming	10,584,519
Duplication proportion	0.69632
Proportion reads mapped	0.8246
Exon/intron ratio	2.81429
Unique read proportion	0.29334

**Bidirectionals**
Total # Tfit bidirectionals	9097
# Promoter Tfit bidirectionals	4850
# Intronic Tfit bidirectionals	3329
# Intergenic Tfit bidirectionals	773
Total # dREG bidirectionals	6934
# Promoter dREG bidirectionals	4748
# Intronic dREG bidirectionals	1753
# Intergenic dREG bidirectionals	653
Part of Tfit master merge?	True
Part of dREG master merge?	True