DBNascent | Samples

SRR8950257 Sample ID 2783

**Data sources**
Paper identifier	Zhang2019fundamental
SRP accession	SRP193758
GEO accession	GSE130266
Samples	SRR8950257

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	123 Mb
Stranded gene read counts	TXT file	918 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	684 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain	C57BL/6
Genotype	Aid -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	76
Read depth after trimming	35,567,456
Duplication proportion	0.55189
Proportion reads mapped	0.7881
Exon/intron ratio	1.88646
Unique read proportion	0.57121

**Bidirectionals**
Total # Tfit bidirectionals	26625
# Promoter Tfit bidirectionals	7323
# Intronic Tfit bidirectionals	11224
# Intergenic Tfit bidirectionals	4351
Total # dREG bidirectionals	15773
# Promoter dREG bidirectionals	4366
# Intronic dREG bidirectionals	6088
# Intergenic dREG bidirectionals	3284
Part of Tfit master merge?	False
Part of dREG master merge?	False