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SRR8957130 Sample ID 266
| Paper identifier | Birkenheuer2020rna |
| SRP accession | SRP193891 |
| GEO accession | GSE130342 |
| Samples | SRR8957130 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 110 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 803 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEp2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | HSV-1 (MOI 5) | -3 hr | -2 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 44,178,047 |
| Duplication proportion | 0.48622 |
| Proportion reads mapped | 0.7345 |
| Exon/intron ratio | 3.87163 |
| Unique read proportion | 0.56088 |
| Total # Tfit bidirectionals | 30231 |
| # Promoter Tfit bidirectionals | 12945 |
| # Intronic Tfit bidirectionals | 11874 |
| # Intergenic Tfit bidirectionals | 4956 |
| Total # dREG bidirectionals | 18299 |
| # Promoter dREG bidirectionals | 6566 |
| # Intronic dREG bidirectionals | 7158 |
| # Intergenic dREG bidirectionals | 3540 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |