DBNascent | Samples

SRR8957134 Sample ID 270

**Data sources**
Paper identifier	Birkenheuer2020rna
SRP accession	SRP193891
GEO accession	GSE130342
Samples	SRR8957134

**Technical details**
QC score	2
Replicate	5
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	71 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	739 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEp2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	HSV-1 (MOI 5)	-3 hr	-2 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	76
Read depth after trimming	27,463,984
Duplication proportion	0.54007
Proportion reads mapped	0.7867
Exon/intron ratio	4.63227
Unique read proportion	0.48485

**Bidirectionals**
Total # Tfit bidirectionals	26304
# Promoter Tfit bidirectionals	11684
# Intronic Tfit bidirectionals	10677
# Intergenic Tfit bidirectionals	3873
Total # dREG bidirectionals	16990
# Promoter dREG bidirectionals	7257
# Intronic dREG bidirectionals	6591
# Intergenic dREG bidirectionals	2804
Part of Tfit master merge?	True
Part of dREG master merge?	True