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SRR8957143 Sample ID 279
| Paper identifier | Birkenheuer2020rna |
| SRP accession | SRP193891 |
| GEO accession | GSE130342 |
| Samples | SRR8957143 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEp2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | HSV-1 (MOI 5) | -6 hr | -5 hr | 1 hr |
| treatment | phosphonoacetic acid (200 microg/mL) | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 52,176,855 |
| Duplication proportion | 0.5528 |
| Proportion reads mapped | 0.8573 |
| Exon/intron ratio | 4.53231 |
| Unique read proportion | 0.59096 |
| Total # Tfit bidirectionals | 40605 |
| # Promoter Tfit bidirectionals | 15276 |
| # Intronic Tfit bidirectionals | 15778 |
| # Intergenic Tfit bidirectionals | 9062 |
| Total # dREG bidirectionals | 26129 |
| # Promoter dREG bidirectionals | 7961 |
| # Intronic dREG bidirectionals | 11325 |
| # Intergenic dREG bidirectionals | 5989 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |