DBNascent | Samples

SRR8992356 Sample ID 2347

**Data sources**
Paper identifier	Stengel2019histone
SRP accession	SRP194280
GEO accession	GSE130502
Samples	SRR8992356

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	Luciferase/Gal4/NeoR/GFP
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	196 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	SUDHL4
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	75
Read depth after trimming	92,451,894
Duplication proportion	0.66315
Proportion reads mapped	0.8715
Exon/intron ratio	3.18349
Unique read proportion	0.6084

**Bidirectionals**
Total # Tfit bidirectionals	37230
# Promoter Tfit bidirectionals	11040
# Intronic Tfit bidirectionals	17523
# Intergenic Tfit bidirectionals	7966
Total # dREG bidirectionals	34886
# Promoter dREG bidirectionals	8085
# Intronic dREG bidirectionals	17278
# Intergenic dREG bidirectionals	8594
Part of Tfit master merge?	True
Part of dREG master merge?	True