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SRR8992356 Sample ID 2347
| Paper identifier | Stengel2019histone |
| SRP accession | SRP194280 |
| GEO accession | GSE130502 |
| Samples | SRR8992356 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | Luciferase/Gal4/NeoR/GFP |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | SUDHL4 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 92,451,894 |
| Duplication proportion | 0.66315 |
| Proportion reads mapped | 0.8715 |
| Exon/intron ratio | 3.18349 |
| Unique read proportion | 0.6084 |
| Total # Tfit bidirectionals | 37230 |
| # Promoter Tfit bidirectionals | 11040 |
| # Intronic Tfit bidirectionals | 17523 |
| # Intergenic Tfit bidirectionals | 7966 |
| Total # dREG bidirectionals | 34886 |
| # Promoter dREG bidirectionals | 8085 |
| # Intronic dREG bidirectionals | 17278 |
| # Intergenic dREG bidirectionals | 8594 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |