Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR8992357 Sample ID 2348
| Paper identifier | Stengel2019histone |
| SRP accession | SRP194280 |
| GEO accession | GSE130502 |
| Samples | SRR8992357 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | Luciferase/Gal4/NeoR/GFP |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | SUDHL4 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | RGFP966 (10 microM) | -3 hr | 0 hr | 3 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 88,890,152 |
| Duplication proportion | 0.6381 |
| Proportion reads mapped | 0.8643 |
| Exon/intron ratio | 3.08683 |
| Unique read proportion | 0.62202 |
| Total # Tfit bidirectionals | 44600 |
| # Promoter Tfit bidirectionals | 11751 |
| # Intronic Tfit bidirectionals | 20435 |
| # Intergenic Tfit bidirectionals | 11469 |
| Total # dREG bidirectionals | 39879 |
| # Promoter dREG bidirectionals | 8664 |
| # Intronic dREG bidirectionals | 19384 |
| # Intergenic dREG bidirectionals | 10971 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |